PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N60LZ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 108aa    MW: 12119.7 Da    PI: 8.8438
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N60LZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.31.4e-201347135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C  C+tt+TplWR gpdg+++LCnaCGl+yrk+++
  Araip.N60LZ 13 CNDCHTTTTPLWRAGPDGPRSLCNACGLRYRKRRK 47
                 99******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.035743IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-17766IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-151070No hitNo description
Gene3DG3DSA:3.30.50.106.7E-171147IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.04E-151260No hitNo description
PROSITE patternPS0034401338IPR000679Zinc finger, GATA-type
PfamPF003202.4E-181347IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MEVQVGAVSN RSCNDCHTTT TPLWRAGPDG PRSLCNACGL RYRKRRKALD KGGAKKSRKR  60
NNRATSEHDD EVDFGCNMEP YTLHGRSQFK LKEEEEAAIL LMALSCAY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205235.13e-77PREDICTED: GATA transcription factor 15-like
TrEMBLM5VMQ31e-26M5VMQ3_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s20080.13e-24(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-15GATA transcription factor 15